Software

GitHub Software Packages

Escort: Methodology and an R package implementing Escort. This method evaluates a single-cell RNA-seq dataset’s suitability for trajectory inference and for quantifying trajectory properties influenced by analysis decisions. Available at: GitHub.

berm: Bootstrap-Enhanced Regularization Method. This package implements the Bootstrap-Enhanced Regularization Method (BERM), a statistical approach aiming to enhance the robustness and accuracy of variable selection and coefficient estimation in immunophenotyping datasets. Available at: GitHub.

Interactive Tools and Applications

shinyEscort: An interactive Shiny application for guiding trajectory construction in single-cell RNA-seq data. Available at: shinyEscort website.