Xiaoru Dong

Xiaoru Dong

Ph.D. Biostatistics

University of Florida

Publications

Key: † indicates co-first authors; * indicates corresponding authors.

  1. Dong, X., Leary, J. R., Yang, C., Brusko, M. A., Brusko, T. M., & Bacher, R.* (2024). Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. Briefings in Bioinformatics, 25(3), bbae216. https://doi.org/10.1093/bib/bbae216
  2. Shapiro, M. R.†, Dong, X.†, Perry, D. J.†, McNichols, J. M., Thirawatananond, P., Posgai, A. L., Peters, L. D., Motwani, K., Musca, R. S., Muir, A., Concannon, P., Jacobsen, L. M., Mathews, C. E., Wasserfall, C. H., Haller, M. J., Schatz, D. A., Atkinson, M. A., Brusko, M. A., Bacher, R.*, & Brusko, T. M.* (2023). Human immune phenotyping reveals accelerated aging in type 1 diabetes. JCI Insight. https://doi.org/10.1172/jci.insight.170767
  3. Jacobsen, L. M.†, Diggins, K.†, Blanchfield, L.†, McNichols, J. A., Perry, D. J., Brant, J., Dong, X., Bacher, R., Gersuk, V. H., Schatz, D. A., Atkinson, M. A., Mathews, C. E., Haller, M. J., Long, S. A.*, Linsley, P. S.*, & Brusko, T. M.* (2023). Responders to low-dose ATG induce CD4 T cell exhaustion in type 1 diabetes. JCI Insight. https://doi.org/10.1172/jci.insight.161812
  4. Dong, X., & Bacher, R. (2023). Analysis of Single-Cell RNA-seq Data. In B. Fridley & X. Wang (Eds.), Statistical Genomics (Vol. 2629, pp. 95–114). Springer US. https://doi.org/10.1007/978-1-0716-2986-4_6
  5. Dong, X., & Bacher, R. (2022). Data-driven assessment of dimension reduction quality for single-cell omics data. Patterns, 3(3), 100465. https://doi.org/10.1016/j.patter.2022.100465
  6. Darden, D. B., Dong, X., Brusko, M. A., Kelly, L., Fenner, B., Rincon, J. C., Dirain, M. L., Ungaro, R., Nacionales, D. C., Gauthier, M., Kladde, M., Brusko, T. M., Bihorac, A., Moore, F. A., Loftus, T., Bacher, R., Moldawer, L. L., Mohr, A. M., & Efron, P. A.* (2021). A Novel Single Cell RNA-seq Analysis of Non-Myeloid Circulating Cells in Late Sepsis. Frontiers in Immunology, 12, 696536. https://doi.org/10.3389/fimmu.2021.696536
  7. Ross, J. J., Wasserfall, C. H., Bacher, R., Perry, D. J., McGrail, K., Posgai, A. L., Dong, X., Muir, A., Li, X., Campbell-Thompson, M., Brusko, T. M., Schatz, D. A., Haller, M. J., & Atkinson, M. A.* (2021). Exocrine Pancreatic Enzymes Are a Serological Biomarker for Type 1 Diabetes Staging and Pancreas Size. Diabetes, 70(4), 944–954. https://doi.org/10.2337/db20-0995